posydon.unit_tests.grids

posydon.unit_tests.grids.test_MODELS

Unit tests of posydon/grids/MODELS.py

class posydon.unit_tests.grids.test_MODELS.TestElements[source]

Bases: object

test_dir()[source]
test_instance_MODELS()[source]
test_instance_get_MODEL_NAME()[source]
class posydon.unit_tests.grids.test_MODELS.TestFunctions[source]

Bases: object

bad_MODEL()[source]
test_get_MODEL_NAME(bad_MODEL, capsys)[source]
class posydon.unit_tests.grids.test_MODELS.TestValues[source]

Bases: object

test_value_MODELS()[source]

posydon.unit_tests.grids.test_downsampling

Unit tests of posydon/grids/downsampling.py

class posydon.unit_tests.grids.test_downsampling.TestElements[source]

Bases: object

test_dir()[source]
test_instance_TrackDownsampler()[source]
test_instance_rescale_from_0_to_1()[source]
class posydon.unit_tests.grids.test_downsampling.TestFunctions[source]

Bases: object

test_rescale_from_0_to_1()[source]
class posydon.unit_tests.grids.test_downsampling.TestTrackDownsampler[source]

Bases: object

TrackDownsampler(independent_sample, dependent_sample)[source]
dependent_sample()[source]
independent_sample()[source]
norm_dependent_sample(dependent_sample)[source]
test_downsample(independent_sample, dependent_sample, TrackDownsampler)[source]
test_extract_downsample(independent_sample, dependent_sample, norm_dependent_sample, TrackDownsampler)[source]
test_find_downsample(TrackDownsampler, capsys)[source]
test_init(independent_sample, dependent_sample, norm_dependent_sample, TrackDownsampler)[source]
test_rescale(dependent_sample, TrackDownsampler)[source]
test_say(TrackDownsampler, capsys)[source]

posydon.unit_tests.grids.test_io

Unit tests of posydon/grids/io.py

class posydon.unit_tests.grids.test_io.TestElements[source]

Bases: object

test_dir()[source]
test_instance_BINARY_OUTPUT_FILE()[source]
test_instance_EEP_FILE_EXTENSIONS()[source]
test_instance_GridReader()[source]
test_instance_POSYDON_FORMAT_OPTIONS()[source]
test_instance_RunReader()[source]
test_instance_SINGLE_OUTPUT_FILE()[source]
test_instance_initial_values_from_dirname()[source]
test_instance_print_meta_contents()[source]
test_instance_read_initial_values()[source]
class posydon.unit_tests.grids.test_io.TestFunctions[source]

Bases: object

grid_csv_files(tmp_path)[source]
inlist_grid_points_files(tmp_path)[source]
test_initial_values_from_dirname()[source]
test_print_meta_contents(grid_csv_files, capsys)[source]
test_read_initial_values(tmp_path, inlist_grid_points_files)[source]
class posydon.unit_tests.grids.test_io.TestGridReader[source]

Bases: object

Empty_dir(tmp_path)[source]
GridReader(tmp_path, Grid_files)[source]
Grid_files(Run_path)[source]
Run_path(tmp_path)[source]
test_get_input_folders(Empty_dir, GridReader, capsys)[source]
test_infer_history_columns(GridReader)[source]
test_init(tmp_path, Run_path, GridReader)[source]
test_read_posydon_format(GridReader, Empty_dir, capsys)[source]
class posydon.unit_tests.grids.test_io.TestRunReader[source]

Bases: object

RunReader(tmp_path)[source]
Run_files(tmp_path)[source]
test_init(tmp_path, RunReader, capsys)[source]
test_read_posydon_format(RunReader, Run_files, capsys)[source]
test_report(RunReader, capsys)[source]
class posydon.unit_tests.grids.test_io.TestValues[source]

Bases: object

test_value_BINARY_OUTPUT_FILE()[source]
test_value_EEP_FILE_EXTENSIONS()[source]
test_value_POSYDON_FORMAT_OPTIONS()[source]
test_value_SINGLE_OUTPUT_FILE()[source]

posydon.unit_tests.grids.test_post_processing

posydon.unit_tests.grids.test_psygrid

Unit tests of posydon/grids/psygrid.py

class posydon.unit_tests.grids.test_psygrid.TestElements[source]

Bases: object

test_dir()[source]
test_instance_ALL_PROPERTIES()[source]
test_instance_DEFAULT_BINARY_HISTORY_COLS()[source]
test_instance_DEFAULT_EEP_HISTORY_COLS()[source]
test_instance_DEFAULT_HISTORY_DS_EXCLUDE()[source]
test_instance_DEFAULT_PROFILE_COLS()[source]
test_instance_DEFAULT_PROFILE_DS_EXCLUDE()[source]
test_instance_DEFAULT_SINGLE_HISTORY_COLS()[source]
test_instance_DEFAULT_STAR_HISTORY_COLS()[source]
test_instance_EXTRA_COLS_DS_EXCLUDE()[source]
test_instance_EXTRA_STAR_COLS_AT_HE_DEPLETION()[source]
test_instance_GRIDPROPERTIES()[source]
test_instance_H5_REC_STR_DTYPE()[source]
test_instance_H5_UNICODE_DTYPE()[source]
test_instance_HDF5_MEMBER_SIZE()[source]
test_instance_N_FLAGS()[source]
test_instance_N_FLAGS_SINGLE()[source]
test_instance_PROPERTIES_ALLOWED()[source]
test_instance_PROPERTIES_TO_BE_CONSISTENT()[source]
test_instance_PROPERTIES_TO_BE_NONE()[source]
test_instance_PROPERTIES_TO_BE_SET()[source]
test_instance_PSyGrid()[source]
test_instance_PSyGridIterator()[source]
test_instance_PSyRunView()[source]
test_instance_TERMINATION_FLAG_COLUMNS()[source]
test_instance_TERMINATION_FLAG_COLUMNS_SINGLE()[source]
test_instance_VALID_KEYS()[source]
test_instance_WARN_VALUES()[source]
test_instance_downsample_history()[source]
test_instance_downsample_profile()[source]
test_instance_join_grids()[source]
class posydon.unit_tests.grids.test_psygrid.TestFunctions[source]

Bases: object

ConfigFile()[source]
grid1_path(tmp_path, binary_history, star_history, profile)[source]
grid2_path(tmp_path, binary_history, star_history, profile)[source]
grid_path_bad_fin(tmp_path, binary_history, star_history, profile)[source]
grid_path_bad_ini(tmp_path, binary_history, star_history, profile)[source]
grid_path_initial_RLO(tmp_path, binary_history, star_history, profile)[source]
grid_path_start_RLO(tmp_path, binary_history, star_history, profile)[source]
h5_out_path(tmp_path)[source]
no_path(tmp_path)[source]
test_downsample_history(ConfigFile, star_history, binary_history)[source]
test_downsample_profile(ConfigFile, profile)[source]
test_join_grids(monkeypatch, no_path, h5_out_path, grid1_path, grid2_path, grid_path_bad_ini, grid_path_bad_fin, grid_path_start_RLO, grid_path_initial_RLO)[source]
class posydon.unit_tests.grids.test_psygrid.TestPSyGrid[source]

Bases: object

Empty_dir(tmp_path)[source]
MESA_EEPs_single(MESA_files_single)[source]
MESA_files(tmp_path)[source]
MESA_files_single(tmp_path)[source]
MESA_no_histories(tmp_path)[source]
MESA_v1_files(tmp_path)[source]
PSyGrid()[source]
eep_files(tmp_path)[source]
grid_path(tmp_path, binary_history, star_history, profile)[source]
grid_path_additional_run(tmp_path, binary_history, star_history, profile)[source]
grid_path_missing_run(tmp_path, binary_history, star_history, profile)[source]
grid_path_negative_run(tmp_path, binary_history, star_history, profile)[source]
grid_path_no_runs(tmp_path, binary_history, star_history, profile)[source]
reset_grid(TestGrid)[source]
same_eep_files(tmp_path)[source]
test_HR(PSyGrid, grid_path, monkeypatch)[source]
test_add_column(PSyGrid, tmp_path)[source]
test_close(PSyGrid, tmp_path)[source]
test_contains(PSyGrid)[source]
test_create(PSyGrid, Empty_dir, MESA_files)[source]
test_create_psygrid(PSyGrid, Empty_dir, MESA_no_histories, MESA_files_single, eep_files, MESA_EEPs_single, MESA_files, MESA_v1_files, monkeypatch)[source]
test_del(PSyGrid, monkeypatch)[source]
test_discover_eeps(PSyGrid, Empty_dir, eep_files, same_eep_files)[source]
test_eq(PSyGrid, grid_path, capsys, monkeypatch)[source]
test_generate_config(PSyGrid)[source]
test_get_pandas_initial_final(PSyGrid, grid_path)[source]
test_getitem(PSyGrid, grid_path)[source]
test_init(PSyGrid, monkeypatch)[source]
test_iter(PSyGrid, grid_path)[source]
test_len(PSyGrid)[source]
test_load(PSyGrid, tmp_path, grid_path, grid_path_negative_run, grid_path_additional_run, grid_path_missing_run, grid_path_no_runs)[source]
test_make_compression_args(PSyGrid)[source]
test_plot(PSyGrid, grid_path, monkeypatch)[source]
test_plot2D(PSyGrid, monkeypatch)[source]
test_reload_hdf5_file(PSyGrid, tmp_path)[source]
test_rerun(PSyGrid, grid_path, tmp_path)[source]
test_reset(PSyGrid)[source]
test_say(PSyGrid, capsys)[source]
test_str(PSyGrid, grid_path)[source]
test_update_final_values(PSyGrid, tmp_path)[source]
class posydon.unit_tests.grids.test_psygrid.TestPSyGridIterator[source]

Bases: object

PSyGrid(grid_path)[source]
PSyGridIterator(PSyGrid)[source]
grid_path(tmp_path, binary_history, star_history, profile)[source]
test_init(PSyGridIterator, PSyGrid)[source]
test_next(PSyGridIterator)[source]
class posydon.unit_tests.grids.test_psygrid.TestPSyRunView[source]

Bases: object

PSyGrid(grid_path)[source]
PSyRunView(PSyGrid)[source]
grid_path(tmp_path, binary_history, star_history, profile)[source]
test_getattr(PSyRunView, monkeypatch)[source]
test_getitem(PSyRunView)[source]
test_hdf5_key(PSyRunView)[source]
test_init(PSyRunView, PSyGrid)[source]
test_str(PSyRunView)[source]
class posydon.unit_tests.grids.test_psygrid.TestValues[source]

Bases: object

test_value_ALL_PROPERTIES()[source]
test_value_DEFAULT_BINARY_HISTORY_COLS()[source]
test_value_DEFAULT_EEP_HISTORY_COLS()[source]
test_value_DEFAULT_HISTORY_DS_EXCLUDE()[source]
test_value_DEFAULT_PROFILE_COLS()[source]
test_value_DEFAULT_PROFILE_DS_EXCLUDE()[source]
test_value_DEFAULT_SINGLE_HISTORY_COLS()[source]
test_value_DEFAULT_STAR_HISTORY_COLS()[source]
test_value_EXTRA_COLS_DS_EXCLUDE()[source]
test_value_EXTRA_STAR_COLS_AT_HE_DEPLETION()[source]
test_value_GRIDPROPERTIES()[source]
test_value_H5_REC_STR_DTYPE()[source]
test_value_H5_UNICODE_DTYPE()[source]
test_value_HDF5_MEMBER_SIZE()[source]
test_value_N_FLAGS()[source]
test_value_N_FLAGS_SINGLE()[source]
test_value_PROPERTIES_ALLOWED()[source]
test_value_PROPERTIES_TO_BE_CONSISTENT()[source]
test_value_PROPERTIES_TO_BE_NONE()[source]
test_value_PROPERTIES_TO_BE_SET()[source]
test_value_TERMINATION_FLAG_COLUMNS()[source]
test_value_TERMINATION_FLAG_COLUMNS_SINGLE()[source]
test_value_VALID_KEYS()[source]
test_value_WARN_VALUES()[source]
posydon.unit_tests.grids.test_psygrid.add_MESA_run_files(path, idx, binary_run=True, with_histories=True, with_profiles=True)[source]

Create files of one MESA run

Parameters:

  • path (str) – The path to the directory containing all the runs.

  • idx (int) – Run index. (1, 3, 4, 5, 8, 11, 14, and 17 have a special meaning)

  • binary_run (bool (default: True)) – If True files of a binary run are created, otherwise run of a single star.

  • with_histories (bool (default: True)) – If True creates history files.

  • with_profiles (bool (default: True)) – If True creates final profile files.

Returns:

Path to the added run.

Return type:

str

posydon.unit_tests.grids.test_psygrid.binary_history()[source]
posydon.unit_tests.grids.test_psygrid.get_PSyGrid(dir_path, idx, binary_history, star_history, profile)[source]

Create a PSyGrid file with two runs

Parameters:

  • dir_path (str) – The path to the directory where to create the PSyGrid.

  • idx (int) – Grid index.

  • binary_history (ndarray) – Binary history data.

  • star_history (ndarray) – Star history data.

  • profile (ndarray) – Final profile data.

Returns:

Path to the PSyGrid file.

Return type:

str

posydon.unit_tests.grids.test_psygrid.profile()[source]
posydon.unit_tests.grids.test_psygrid.star_history()[source]

posydon.unit_tests.grids.test_scrubbing

Unit tests of posydon/grids/scrubbing.py

class posydon.unit_tests.grids.test_scrubbing.TestElements[source]

Bases: object

test_dir()[source]
test_instance_keep_after_RLO()[source]
test_instance_keep_till_central_abundance_He_C()[source]
test_instance_scrub()[source]
class posydon.unit_tests.grids.test_scrubbing.TestFunctions[source]

Bases: object

ages(models)[source]
binary_history()[source]
models()[source]
star_history()[source]
star_history2()[source]
tables()[source]
test_keep_after_RLO(star_history, binary_history)[source]
test_keep_till_central_abundance_He_C(star_history, star_history2, binary_history)[source]
test_scrub(tables, models, ages)[source]

posydon.unit_tests.grids.test_termination_flags

Unit tests of posydon/grids/termination_flags.py

class posydon.unit_tests.grids.test_termination_flags.TestElements[source]

Bases: object

test_dir()[source]
test_instance_STAR_HISTORY_VARIABLES()[source]
test_instance_check_state_from_history()[source]
test_instance_get_detected_initial_RLO()[source]
test_instance_get_flag_from_MESA_output()[source]
test_instance_get_flags_from_MESA_run()[source]
test_instance_get_mass_transfer_flag()[source]
test_instance_get_nearest_known_initial_RLO()[source]
test_instance_infer_interpolation_class()[source]
class posydon.unit_tests.grids.test_termination_flags.TestFunctions[source]

Bases: object

binary_history()[source]
grid()[source]
iniRLO_boundary()[source]
out_path(tmp_path)[source]
out_path2(tmp_path)[source]
out_path3(tmp_path)[source]
out_path4(tmp_path)[source]
out_path5(tmp_path)[source]
out_path6(tmp_path)[source]
star_history()[source]
test_check_state_from_history(star_history, binary_history)[source]
test_get_detected_initial_RLO(grid, iniRLO_boundary)[source]
test_get_flag_from_MESA_output(out_path, out_path2, out_path3, out_path4, out_path5, out_path6)[source]
test_get_flags_from_MESA_run(star_history, binary_history)[source]
test_get_mass_transfer_flag(star_history, binary_history)[source]
test_get_nearest_known_initial_RLO(iniRLO_boundary, monkeypatch)[source]
test_infer_interpolation_class()[source]
class posydon.unit_tests.grids.test_termination_flags.TestValues[source]

Bases: object

test_value_STAR_HISTORY_VARIABLES()[source]